kirgenotyping
Kirgenotyping
Bioninformatic tools to be installed in any Linux VM in order to run the following Killer-cell immunoglobulin-like receptors KIR inference pipeline: https://github.com/albertodescalzo/KIRgenotyping/. For more information about the pipeline, see the GitHub page.
Requirements
Role and inference pipeline were used within the de.NBI Cloud (German Network for Bioinformatics Infrastructure) in a VM with Ubuntu 20.04 and 22.04, but it should work in other cloud suppliers.
Role Variables
Adapt the software versions to your preferences. The given variables were used to run the pipeline. Additionally, pay attention to home_path and username. They should be set up to /home/runner/workand runner when testing CI.
Dependencies
Example Playbook
- hosts: denbi_vms
roles:
- kirgenotyping
License
BSD
Author Information
About
Installation of (bioinformatics) software in VMs within deNBI Cloud to run Killer-cell immunoglobulin-like receptors (KIR) genotyping using state-of-the-art method vs Machine Learning (ML)
Install
ansible-galaxy install albertodescalzo/ansible-role-kirgenotypingLicense
bsd-2-clause
Downloads
5
Owner